General remarks

PyCorrFit has no funding and a vanishingly small developer community. My personal objective is to keep PyCorrFit operational on Linux and Windows which is currently limited by the free time I have available.

An active community is very important for an open source project such as PyCorrFit. You can help this community grow (and thus help improve PyCorrFit) in numerous ways:

  1. Tell your colleagues and peers about PyCorrFit. One of them might be able to contribute to the project.
  2. If you need a new feature in PyCorrFit, publicly announce a bounty for its implementation.
  3. If your research heavily relies on FCS, please consider diverting some of your resources to the development of PyCorrFit.
  4. You don’t have to be a Python programmer to contribute. If you are familiar with reStrucuredText or LaTeX, you might be able to help out with the online documentation.
  5. Please cite: Müller et al. Bioinformatics 30(17): 2532–2533, 2014

If you are planning to contribute to PyCorrFit, please contact me via the PyCorrFit issue page on GitHub such that we may coordinate a pull request.

For developers

If you would like to know how a contribution to PyCorrFit should look like, please create an issue on GitHub and I will update this part of the documentation.

Running from source

The easiest way to run PyCorrFit from source is to use Anaconda. PyCorrFit requires wxPython which is not available at the Python package index. Make sure you install a unicode version of wxPython. Detailed installation instructions are here.


The main branch for developing PyCorrFit is develop. Small changes that do not break anything can be submitted to this branch. If you want to do big changes, please (fork ShapeOut and) create a separate branch, e.g. my_new_feature_dev, and create a pull-request to develop once you are done making your changes. Please make sure to also update the changelog.


PyCorrFit is tested using pytest. If you have the time, please write test methods for your code and put them in the tests directory. You may run the tests manually by issuing:

python test

Windows test binaries

After each commit to the PyCorrFit repository, a binary installer is created by Appveyor. Click on a build and navigate to ARTIFACTS (upper right corner right under the running time of the build). From there you can download the Windows installer of the commit.